eelbrain.pipeline.RawSource¶

class eelbrain.pipeline.RawSource(filename='{subject}_{recording}-raw.fif', reader=<function read_raw_fif>, sysname=None, rename_channels=None, montage=None, connectivity=None, **kwargs)¶

Raw data source

Parameters:

filename : str

Pattern for filenames. The pattern should contain the fields {subject} and {recording} (which internally is expanded to session and, if applicable, visit; default '{subject}_{recording}-raw.fif').

reader : callable

Function for reading data (default is mne.io.read_raw_fif()).

sysname : str

Used to determine sensor positions (not needed for KIT files, or when a montage is specified).

rename_channels : dict

Rename channels before applying montage, {from: to} dictionary; useful to convert idiosyncratic naming conventions to standard montages.

montage : str

Name of a montage that is applied to raw data to set sensor positions.

connectivity : str | list of (str, str)

Connectivity between sensors. Can be specified as:

list of connections (e.g., [('OZ', 'O1'), ('OZ', 'O2'), ...])
numpy.ndarray of int, shape (n_edges, 2), to specify connections in terms of indices. Each row should specify one connection [i, j] with i < j. If the array’s dtype is uint32, property checks are disabled to improve efficiency.
'grid' to use adjacency in the sensor names
'auto' to use mne.channels.find_ch_connectivity()

If unspecified, it is inferred from sysname if possible.

…

Additional parameters for the reader function.