eelbrain.plot.brain.annot¶

eelbrain.plot.brain.annot(annot, subject='fsaverage', surf='smoothwm', borders=False, alpha=0.7, hemi=None, views=('lat', 'med'), w=None, h=None, axw=None, axh=None, foreground=None, background=None, parallel=True, cortex='classic', title=None, subjects_dir=None, name=None)¶

Plot the parcellation in an annotation file

Parameters:

annot : str: Name of the annotation (e.g., “PALS_B12_LOBES”).
subject : str: Name of the subject (default ‘fsaverage’).
surf : ‘inflated’ | ‘pial’ | ‘smoothwm’ | ‘sphere’ | ‘white’: Freesurfer surface to use as brain geometry.
borders : bool | int: Show only label borders (PySurfer Brain.add_annotation() argument).
alpha : scalar: Alpha of the annotation (1=opaque, 0=transparent, default 0.7).
hemi : ‘lh’ | ‘rh’ | ‘both’ | ‘split’: Which hemispheres to plot (default includes hemisphere with more than one label in the annot file).
views : str | iterator of str: View or views to show in the figure. Options are: ‘rostral’, ‘parietal’, ‘frontal’, ‘ventral’, ‘lateral’, ‘caudal’, ‘medial’, ‘dorsal’.
w, h, axw, axh : scalar: Layout parameters (figure width/height, subplot width/height).
foreground : mayavi color: Figure foreground color (i.e., the text color).
background : mayavi color: Figure background color.
parallel : bool: Set views to parallel projection (default True).
cortex : str | tuple | dict: Mark gyri and sulci on the cortex. Presets: 'classic' (default), 'high_contrast', 'low_contrast', 'bone'. Can also be a single color (e.g. 'red', (0.1, 0.4, 1.)) or a tuple of two colors for gyri and sulci (e.g. ['red', 'blue'] or [(1, 0, 0), (0, 0, 1)]). For all options see the PySurfer documentation.
title : str: title for the window (default is the parcellation name).
subjects_dir : None | str: Override the default subjects_dir.
name : str: Equivalent to title, for consistency with other plotting functions.

Returns:

brain : surfer.Brain: PySurfer Brain instance.