eelbrain.plot.TopoArray¶
-
class
eelbrain.plot.
TopoArray
(y, xax=None, ds=None, sub=None, vmax=None, vmin=None, cmap=None, contours=None, ntopo=3, t=(), proj='default', res=None, interpolation=None, clip='even', clip_distance=0.05, head_radius=None, head_pos=0, im_interpolation=None, sensorlabels=None, mark=None, mcolor=None, xticklabels=-1, axtitle=True, title=None, *args, **kwargs)¶ Channel by sample plots with topomaps for individual time points
Parameters: - y : (list of) NDVar
Data to plot.
- xax : None | categorial
Create a separate plot for each cell in this model.
- ds : None | Dataset
If a Dataset is provided, data can be specified as strings.
- sub : str | array
Specify a subset of the data.
- vmax : scalar
Upper limits for the colormap (default is determined from data).
- vmin : scalar
Lower limit for the colormap (default
-vmax
).- cmap : str
Colormap (default depends on the data).
- contours : int | sequence | dict
Contours to draw on topomaps. Can be an int (number of contours, including
vmin
/vmax
), a sequence (values at which to draw contours), or a**kwargs
dict (must contain at least the “levels” key). Default is no contours.- ntopo | int
number of topomaps per array-plot.
- t : list of scalar (len <= ntopo)
Time points for topomaps.
- proj : str
The sensor projection to use for topomaps.
- res : int
Resolution of the topomaps (width = height =
res
).- interpolation : ‘nearest’ | ‘linear’ | ‘spline’
Method for interpolating topo-map between sensors (default is based on mne-python).
- clip : bool | ‘even’ | ‘circle’
Outline for clipping topomaps: ‘even’ to clip at a constant distance (default), ‘circle’ to clip using a circle.
- clip_distance : scalar
How far from sensor locations to clip (1 is the axes height/width).
- head_radius : scalar | tuple
Radius of the head outline drawn over sensors (on sensor plots with normalized positions, 0.45 is the outline of the topomap); 0 to plot no outline; tuple for separate (right, anterior) radius. The default is determined automatically.
- head_pos : scalar
Head outline position along the anterior axis (0 is the center, 0.5 is the top end of the plot).
- im_interpolation : str
Topomap image interpolation (see Matplotlib’s
imshow()
). Matplotlib 1.5.3’s SVG output can’t handle uneven aspect withinterpolation='none'
, useinterpolation='nearest'
instead.- sensorlabels : ‘none’ | ‘index’ | ‘name’ | ‘fullname’
Show sensor labels. For ‘name’, any prefix common to all names is removed; with ‘fullname’, the full name is shown.
- mark : Sensor index
Sensors which to mark.
- mcolor : matplotlib color
Color for marked sensors.
- xticklabels : bool | int | list of int
Specify which axes should be annotated with x-axis tick labels. Use
int
for a single axis (default-1
), a sequence ofint
for multiple specific axes, orbool
for all/none.- axtitle : bool | sequence of str
Title for the individual axes. The default is to show the names of the epochs, but only if multiple axes are plotted.
- …
Also accepts General layout parameters.
Notes
- LMB click on a topomap selects it for tracking the mouse pointer
- LMB on the array plot fixates the topomap time point
- RMB on a topomap removes the topomap
Methods¶
add_contour (self, meas, level[, color]) |
Add a contour line |
add_hline (self, y[, axes]) |
Draw a horizontal line on one or more axes |
add_hspan (self, bottom, top[, axes]) |
Draw a horizontal bar on one or more axes |
add_vline (self, x[, axes]) |
Draw a vertical line on one or more axes |
add_vspan (self, xmin, xmax[, axes]) |
Draw a vertical bar on one or more axes |
close (self) |
Close the figure. |
draw (self) |
(Re-)draw the figure (after making manual changes). |
draw_crosshairs (self[, enable]) |
Draw crosshairs under the cursor |
get_vlim (self[, meas]) |
Retrieve colormap value limits as (vmin, vmax) tuple |
image (self[, name, format]) |
Create FMTXT Image from the figure |
plot_colorbar (self[, label, label_position, …]) |
Plot a colorbar corresponding to the displayed data |
save (self, *args, **kwargs) |
Short-cut for Matplotlib’s savefig() |
set_cmap (self, cmap[, meas]) |
Change the colormap |
set_name (self, name) |
Set the figure window title |
set_topo_t (self, topo_id, t) |
Set the time point for a topo-map (same for all array plots) |
set_topo_t_single (self, topo_id, t) |
Set the time for a single topomap. |
set_topo_ts (self, *t_list) |
Set the time points displayed in topo-maps across all array-plots |
set_vlim (self[, v, vmax, meas]) |
Change the colormap limits |
set_xlabel (self, label[, ax]) |
Set the label for the x-axis |
set_xtick_rotation (self, rotation) |
Rotate every x-axis tick-label by an angle (counterclockwise, in degrees) |
set_ylabel (self, label[, ax]) |
Set the label for the y-axis |