eelbrain.pipeline.SubParc¶
-
class
eelbrain.pipeline.
SubParc
(base, labels, views=None)¶ A subset of labels in another parcellation
Parameters: - base : str
The name of the parcellation that provides the input labels. A common
base
is the'aparc'
parcellation [1].- labels : tuple of str
Labels to copy from
base
. In order to include a label in both hemispheres, omit the*-hemi
tag. For example, withbase='aparc'
,labels=('transversetemporal',)
would include the transverse temporal gyrus in both hemisphere, whereaslabels=('transversetemporal-lh',)
would include the transverse temporal gyrus of only the left hemisphere.- views : sequence of str
Views shown in anatomical plots, e.g.
("medial", "lateral")
.
See also
References
[1] Desikan, R. S., Ségonne, F., Fischl, B., Quinn, B. T., Dickerson, B. C., Blacker, D., … Killiany, R. J. (2006). An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest. NeuroImage, 31(3), 968–980. 10.1016/j.neuroimage.2006.01.021 Examples
Lateral temporal lobe of both hemispheres:
parcs = { 'lateraltemporal': SubParc('aparc', ( 'transversetemporal', 'superiortemporal', 'bankssts', 'middletemporal', 'inferiortemporal')), }