eelbrain.pipeline.MneExperiment.make_report¶

MneExperiment.make_report(self, test, parc=None, mask=None, pmin=None, tstart=None, tstop=None, samples=10000, baseline=True, src_baseline=None, include=0.2, redo=False, **state)¶

Create an HTML report on spatio-temporal clusters

Parameters:

test : str: Test for which to create a report (entry in MneExperiment.tests).
parc : None | str: Find clusters in each label of parc (as opposed to the whole brain).
mask : None | str: Parcellation to apply as mask. Can only be specified if parc==None.
pmin : None | scalar, 1 > pmin > 0 | ‘tfce’: Equivalent p-value for cluster threshold, or ‘tfce’ for threshold-free cluster enhancement.
tstart : scalar: Beginning of the time window for the test in seconds (default is the beginning of the epoch).
tstop : scalar: End of the time window for the test in seconds (default is the end of the epoch).
samples : int > 0: Number of samples used to determine cluster p values for spatio- temporal clusters (default 10,000).
baseline : bool | tuple: Apply baseline correction using this period in sensor space. True to use the epoch’s baseline specification (default).
src_baseline : bool | tuple: Apply baseline correction using this period in source space. True to use the epoch’s baseline specification. The default is to not apply baseline correction.
include : 0 < scalar <= 1: Create plots for all clusters with p-values smaller or equal this value.
redo : bool: If the target file already exists, delete and recreate it. This only applies to the HTML result file, not to the test.
…: State parameters.