eelbrain.pipeline.MneExperiment.make_report
- MneExperiment.make_report(test, parc=None, mask=None, pmin=None, tstart=None, tstop=None, samples=10000, baseline=True, src_baseline=None, include=0.2, redo=False, **state)
Create an HTML report on spatio-temporal clusters
- Parameters
test (
str
) – Test for which to create a report (entry in MneExperiment.tests).parc (
Optional
[str
]) – Run the test separately in each label of parc. Warning: for spatio-temporal tests, this does not properly correct for multiple comparisons.mask (
Optional
[str
]) – Parcellation to use as anatomical mask in which to perform the test.pmin (
Optional
[str
]) – Equivalent p-value for cluster threshold, or ‘tfce’ for threshold-free cluster enhancement.tstart (
Optional
[float
]) – Beginning of the time window for the test in seconds (default is the beginning of the epoch).tstop (
Optional
[float
]) – End of the time window for the test in seconds (default is the end of the epoch).samples (
int
) – Number of samples used to determine cluster p values for spatio- temporal clusters (default 10,000).baseline (
Union
[bool
,Tuple
[Optional
[float
],Optional
[float
]]]) – Apply baseline correction using this period in sensor space. True to use the epoch’s baseline specification (default).src_baseline (
Union
[bool
,Tuple
[Optional
[float
],Optional
[float
]],None
]) – Apply baseline correction using this period in source space. True to use the epoch’s baseline specification. The default is to not apply baseline correction.include (0 < scalar <= 1) – Create plots for all clusters with p-values smaller or equal this value.
redo (
bool
) – If the target file already exists, delete and recreate it. This only applies to the HTML result file, not to the test.... – State parameters.
See also
load_test
load corresponding data and tests